Adding DT R packages prevents Docker from running
I use Docker to run Shiny app, and I install some R packages in the Dockerfile (here is the portion of the Dockerfile, I omitted some lines, marking it with <...>):
FROM r-base:latest
RUN apt-get update && apt-get install -y -t unstable
sudo
gdebi-core
make
git
gcc
<...>
R -e "install.packages(c('shiny', 'rmarkdown'), repos='https://cran.rstudio.com/')" &&
R -e "install.packages(c('ada','bsplus','caret','ddalpha','diptest','doMC','dplyr','e1071','evtree','fastAdaboost','foreach','GGally','ggplot2','gridExtra','iterators','kernlab','lattice','markdown','MASS','mboost','nnet','optparse','partykit','plyr','pROC','PRROC','randomForest','recipes','reshape2','RSNNS','scales','shinyBS','shinyFiles','shinythemes'))"
This works fine. But if I add one more R package (DT), the container still builds fine (and I can see that the package gets installed properly) but when I try to run the container I get:
Loading required package: shiny
Error in dir.exists(lib) : invalid filename argument
Calls: <Anonymous> ... load_libraries -> get_package -> install.packages -> dir.exists
Execution halted
This error is not informative at all and I can't figure out what possibly can be wrong. I will appreciate any ideas! Thank you.
r docker shiny dt
asked Nov 12 '18 at 20:04
kintany
129110
add a comment |
I use Docker to run Shiny app, and I install some R packages in the Dockerfile (here is the portion of the Dockerfile, I omitted some lines, marking it with <...>):
FROM r-base:latest
RUN apt-get update && apt-get install -y -t unstable
sudo
gdebi-core
make
git
gcc
<...>
R -e "install.packages(c('shiny', 'rmarkdown'), repos='https://cran.rstudio.com/')" &&
R -e "install.packages(c('ada','bsplus','caret','ddalpha','diptest','doMC','dplyr','e1071','evtree','fastAdaboost','foreach','GGally','ggplot2','gridExtra','iterators','kernlab','lattice','markdown','MASS','mboost','nnet','optparse','partykit','plyr','pROC','PRROC','randomForest','recipes','reshape2','RSNNS','scales','shinyBS','shinyFiles','shinythemes'))"
This works fine. But if I add one more R package (DT), the container still builds fine (and I can see that the package gets installed properly) but when I try to run the container I get:
Loading required package: shiny
Error in dir.exists(lib) : invalid filename argument
Calls: <Anonymous> ... load_libraries -> get_package -> install.packages -> dir.exists
Execution halted
This error is not informative at all and I can't figure out what possibly can be wrong. I will appreciate any ideas! Thank you.
r docker shiny dt
asked Nov 12 '18 at 20:04
kintany
129110
Does it work locally (ie, outside of a container)?
– Hong Ooi
Nov 12 '18 at 22:17
@HongOoi Yes, it does!
– kintany
Nov 13 '18 at 13:12
add a comment |
I use Docker to run Shiny app, and I install some R packages in the Dockerfile (here is the portion of the Dockerfile, I omitted some lines, marking it with <...>):
FROM r-base:latest
RUN apt-get update && apt-get install -y -t unstable
sudo
gdebi-core
make
git
gcc
<...>
R -e "install.packages(c('shiny', 'rmarkdown'), repos='https://cran.rstudio.com/')" &&
R -e "install.packages(c('ada','bsplus','caret','ddalpha','diptest','doMC','dplyr','e1071','evtree','fastAdaboost','foreach','GGally','ggplot2','gridExtra','iterators','kernlab','lattice','markdown','MASS','mboost','nnet','optparse','partykit','plyr','pROC','PRROC','randomForest','recipes','reshape2','RSNNS','scales','shinyBS','shinyFiles','shinythemes'))"
This works fine. But if I add one more R package (DT), the container still builds fine (and I can see that the package gets installed properly) but when I try to run the container I get:
Loading required package: shiny
Error in dir.exists(lib) : invalid filename argument
Calls: <Anonymous> ... load_libraries -> get_package -> install.packages -> dir.exists
Execution halted
This error is not informative at all and I can't figure out what possibly can be wrong. I will appreciate any ideas! Thank you.
r docker shiny dt
asked Nov 12 '18 at 20:04
kintany
129110
I use Docker to run Shiny app, and I install some R packages in the Dockerfile (here is the portion of the Dockerfile, I omitted some lines, marking it with <...>):
FROM r-base:latest
RUN apt-get update && apt-get install -y -t unstable
sudo
gdebi-core
make
git
gcc
<...>
R -e "install.packages(c('shiny', 'rmarkdown'), repos='https://cran.rstudio.com/')" &&
R -e "install.packages(c('ada','bsplus','caret','ddalpha','diptest','doMC','dplyr','e1071','evtree','fastAdaboost','foreach','GGally','ggplot2','gridExtra','iterators','kernlab','lattice','markdown','MASS','mboost','nnet','optparse','partykit','plyr','pROC','PRROC','randomForest','recipes','reshape2','RSNNS','scales','shinyBS','shinyFiles','shinythemes'))"
This works fine. But if I add one more R package (DT), the container still builds fine (and I can see that the package gets installed properly) but when I try to run the container I get:
Loading required package: shiny
Error in dir.exists(lib) : invalid filename argument
Calls: <Anonymous> ... load_libraries -> get_package -> install.packages -> dir.exists
Execution halted
This error is not informative at all and I can't figure out what possibly can be wrong. I will appreciate any ideas! Thank you.
r docker shiny dt
r docker shiny dt
asked Nov 12 '18 at 20:04
kintany
129110
asked Nov 12 '18 at 20:04
kintany
129110
asked Nov 12 '18 at 20:04
kintany
129110
asked Nov 12 '18 at 20:04
kintany
129110
asked Nov 12 '18 at 20:04
kintany
129110
129110
Does it work locally (ie, outside of a container)?
– Hong Ooi
Nov 12 '18 at 22:17
@HongOoi Yes, it does!
– kintany
Nov 13 '18 at 13:12
add a comment |
Does it work locally (ie, outside of a container)?
– Hong Ooi
Nov 12 '18 at 22:17
@HongOoi Yes, it does!
– kintany
Nov 13 '18 at 13:12
Does it work locally (ie, outside of a container)?
– Hong Ooi
Nov 12 '18 at 22:17
Does it work locally (ie, outside of a container)?
– Hong Ooi
Nov 12 '18 at 22:17
@HongOoi Yes, it does!
– kintany
Nov 13 '18 at 13:12
@HongOoi Yes, it does!
– kintany
Nov 13 '18 at 13:12
add a comment |
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Does it work locally (ie, outside of a container)?
– Hong Ooi
Nov 12 '18 at 22:17
@HongOoi Yes, it does!
– kintany
Nov 13 '18 at 13:12