Rstudio server on Azure Hdinsight R Packages not installing
I have provisioned an Azure HDInsight cluster type ML Services (R Server), operating system Linux, version ML Services 9.3 on Spark 2.2 with Java 8 HDI 3.6.
I am able to login to Rstudio on the head node via SSH access and I ran the script
from this tutorial - https://blogs.msdn.microsoft.com/azuredatalake/2017/06/26/run-h2o-ai-in-r-on-azure-hdinsight/
located here:
https://bostoncaqs.blob.core.windows.net/scriptaction/install-h2opackages.sh
to install H2o related packages unto the head and worker nodes.
When I run the library(sparklyr) and library(dplyr) it works fine, however Rstudio does not find the h2o package and when I try to install the h2o package it fails because RCurl is not installed. Then when I try to install RCurl I get the following error "Error : package 'bitops' required by 'RCurl' could not be found". When I install bitops it successfully installs but RCurl does not seem to be finding the bitops package within the default install directory temp folder on the HDInsight head node VM's harddrive.
My question is, how do I get the Rstudio Server to recognize where packages are installed on my HDInsight head node? I am using the default install directory when installing each package but the subsequent packages do not recognize dependent packages are installed.
Thanks!
azure rstudio h2o sparklyr rstudio-server
add a comment |
I have provisioned an Azure HDInsight cluster type ML Services (R Server), operating system Linux, version ML Services 9.3 on Spark 2.2 with Java 8 HDI 3.6.
I am able to login to Rstudio on the head node via SSH access and I ran the script
from this tutorial - https://blogs.msdn.microsoft.com/azuredatalake/2017/06/26/run-h2o-ai-in-r-on-azure-hdinsight/
located here:
https://bostoncaqs.blob.core.windows.net/scriptaction/install-h2opackages.sh
to install H2o related packages unto the head and worker nodes.
When I run the library(sparklyr) and library(dplyr) it works fine, however Rstudio does not find the h2o package and when I try to install the h2o package it fails because RCurl is not installed. Then when I try to install RCurl I get the following error "Error : package 'bitops' required by 'RCurl' could not be found". When I install bitops it successfully installs but RCurl does not seem to be finding the bitops package within the default install directory temp folder on the HDInsight head node VM's harddrive.
My question is, how do I get the Rstudio Server to recognize where packages are installed on my HDInsight head node? I am using the default install directory when installing each package but the subsequent packages do not recognize dependent packages are installed.
Thanks!
azure rstudio h2o sparklyr rstudio-server
add a comment |
I have provisioned an Azure HDInsight cluster type ML Services (R Server), operating system Linux, version ML Services 9.3 on Spark 2.2 with Java 8 HDI 3.6.
I am able to login to Rstudio on the head node via SSH access and I ran the script
from this tutorial - https://blogs.msdn.microsoft.com/azuredatalake/2017/06/26/run-h2o-ai-in-r-on-azure-hdinsight/
located here:
https://bostoncaqs.blob.core.windows.net/scriptaction/install-h2opackages.sh
to install H2o related packages unto the head and worker nodes.
When I run the library(sparklyr) and library(dplyr) it works fine, however Rstudio does not find the h2o package and when I try to install the h2o package it fails because RCurl is not installed. Then when I try to install RCurl I get the following error "Error : package 'bitops' required by 'RCurl' could not be found". When I install bitops it successfully installs but RCurl does not seem to be finding the bitops package within the default install directory temp folder on the HDInsight head node VM's harddrive.
My question is, how do I get the Rstudio Server to recognize where packages are installed on my HDInsight head node? I am using the default install directory when installing each package but the subsequent packages do not recognize dependent packages are installed.
Thanks!
azure rstudio h2o sparklyr rstudio-server
I have provisioned an Azure HDInsight cluster type ML Services (R Server), operating system Linux, version ML Services 9.3 on Spark 2.2 with Java 8 HDI 3.6.
I am able to login to Rstudio on the head node via SSH access and I ran the script
from this tutorial - https://blogs.msdn.microsoft.com/azuredatalake/2017/06/26/run-h2o-ai-in-r-on-azure-hdinsight/
located here:
https://bostoncaqs.blob.core.windows.net/scriptaction/install-h2opackages.sh
to install H2o related packages unto the head and worker nodes.
When I run the library(sparklyr) and library(dplyr) it works fine, however Rstudio does not find the h2o package and when I try to install the h2o package it fails because RCurl is not installed. Then when I try to install RCurl I get the following error "Error : package 'bitops' required by 'RCurl' could not be found". When I install bitops it successfully installs but RCurl does not seem to be finding the bitops package within the default install directory temp folder on the HDInsight head node VM's harddrive.
My question is, how do I get the Rstudio Server to recognize where packages are installed on my HDInsight head node? I am using the default install directory when installing each package but the subsequent packages do not recognize dependent packages are installed.
Thanks!
azure rstudio h2o sparklyr rstudio-server
azure rstudio h2o sparklyr rstudio-server
asked Nov 12 '18 at 18:07
Kreitz Gigs
426
426
add a comment |
add a comment |
1 Answer
1
active
oldest
votes
I did not realize that I was not installing the packages under the Edge node, when I installed the packages on all of the nodes I had no problems with the packages.
add a comment |
Your Answer
StackExchange.ifUsing("editor", function ()
StackExchange.using("externalEditor", function ()
StackExchange.using("snippets", function ()
StackExchange.snippets.init();
);
);
, "code-snippets");
StackExchange.ready(function()
var channelOptions =
tags: "".split(" "),
id: "1"
;
initTagRenderer("".split(" "), "".split(" "), channelOptions);
StackExchange.using("externalEditor", function()
// Have to fire editor after snippets, if snippets enabled
if (StackExchange.settings.snippets.snippetsEnabled)
StackExchange.using("snippets", function()
createEditor();
);
else
createEditor();
);
function createEditor()
StackExchange.prepareEditor(
heartbeatType: 'answer',
autoActivateHeartbeat: false,
convertImagesToLinks: true,
noModals: true,
showLowRepImageUploadWarning: true,
reputationToPostImages: 10,
bindNavPrevention: true,
postfix: "",
imageUploader:
brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
allowUrls: true
,
onDemand: true,
discardSelector: ".discard-answer"
,immediatelyShowMarkdownHelp:true
);
);
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function ()
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53267763%2frstudio-server-on-azure-hdinsight-r-packages-not-installing%23new-answer', 'question_page');
);
Post as a guest
Required, but never shown
1 Answer
1
active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
I did not realize that I was not installing the packages under the Edge node, when I installed the packages on all of the nodes I had no problems with the packages.
add a comment |
I did not realize that I was not installing the packages under the Edge node, when I installed the packages on all of the nodes I had no problems with the packages.
add a comment |
I did not realize that I was not installing the packages under the Edge node, when I installed the packages on all of the nodes I had no problems with the packages.
I did not realize that I was not installing the packages under the Edge node, when I installed the packages on all of the nodes I had no problems with the packages.
answered Nov 13 '18 at 6:24
Kreitz Gigs
426
426
add a comment |
add a comment |
Thanks for contributing an answer to Stack Overflow!
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Some of your past answers have not been well-received, and you're in danger of being blocked from answering.
Please pay close attention to the following guidance:
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function ()
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53267763%2frstudio-server-on-azure-hdinsight-r-packages-not-installing%23new-answer', 'question_page');
);
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
);
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown