Converting a Dataframe into a Series with cells containing arrays in Pandas









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Sorry if this has been answered before, but I'm having trouble with the solution.



I have a 2D DataFrame with column names, where the elements contain both non-null and null values. I'd like to 'flatten' the 2D DataFrame to a 1D Series, where I preserve only the non-null data as a list in the series cell with the corresponding header.



ie: the following:



Going from (type pandas.Dataframe):



| asset | name | id |
---------------------
| a | john | 001|
| a | NaN | 002|
| NaN | dave | 003|


To (type pandas.Series):



| asset | name | id |
------------------------------------------
| [a] | [john, dave] | [001, 002, 003] |


Thank you!



EDIT: Why I would need this:



I am starting with a large DataFrame that has multiple duplicated attributes with timestamped 'rows'. At any given timestamp, the information in the rows could be added to, to deleted. I have used df.where() to return a dataframe of the unique values, and am attempting to flatten it down to one attribute collection of 'ids' per row.



In practice, the example table is from a a single GroupBy object.










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  • 1




    Can you please explain why you would want this?
    – coldspeed
    Nov 10 at 23:16














up vote
1
down vote

favorite












Sorry if this has been answered before, but I'm having trouble with the solution.



I have a 2D DataFrame with column names, where the elements contain both non-null and null values. I'd like to 'flatten' the 2D DataFrame to a 1D Series, where I preserve only the non-null data as a list in the series cell with the corresponding header.



ie: the following:



Going from (type pandas.Dataframe):



| asset | name | id |
---------------------
| a | john | 001|
| a | NaN | 002|
| NaN | dave | 003|


To (type pandas.Series):



| asset | name | id |
------------------------------------------
| [a] | [john, dave] | [001, 002, 003] |


Thank you!



EDIT: Why I would need this:



I am starting with a large DataFrame that has multiple duplicated attributes with timestamped 'rows'. At any given timestamp, the information in the rows could be added to, to deleted. I have used df.where() to return a dataframe of the unique values, and am attempting to flatten it down to one attribute collection of 'ids' per row.



In practice, the example table is from a a single GroupBy object.










share|improve this question



















  • 1




    Can you please explain why you would want this?
    – coldspeed
    Nov 10 at 23:16












up vote
1
down vote

favorite









up vote
1
down vote

favorite











Sorry if this has been answered before, but I'm having trouble with the solution.



I have a 2D DataFrame with column names, where the elements contain both non-null and null values. I'd like to 'flatten' the 2D DataFrame to a 1D Series, where I preserve only the non-null data as a list in the series cell with the corresponding header.



ie: the following:



Going from (type pandas.Dataframe):



| asset | name | id |
---------------------
| a | john | 001|
| a | NaN | 002|
| NaN | dave | 003|


To (type pandas.Series):



| asset | name | id |
------------------------------------------
| [a] | [john, dave] | [001, 002, 003] |


Thank you!



EDIT: Why I would need this:



I am starting with a large DataFrame that has multiple duplicated attributes with timestamped 'rows'. At any given timestamp, the information in the rows could be added to, to deleted. I have used df.where() to return a dataframe of the unique values, and am attempting to flatten it down to one attribute collection of 'ids' per row.



In practice, the example table is from a a single GroupBy object.










share|improve this question















Sorry if this has been answered before, but I'm having trouble with the solution.



I have a 2D DataFrame with column names, where the elements contain both non-null and null values. I'd like to 'flatten' the 2D DataFrame to a 1D Series, where I preserve only the non-null data as a list in the series cell with the corresponding header.



ie: the following:



Going from (type pandas.Dataframe):



| asset | name | id |
---------------------
| a | john | 001|
| a | NaN | 002|
| NaN | dave | 003|


To (type pandas.Series):



| asset | name | id |
------------------------------------------
| [a] | [john, dave] | [001, 002, 003] |


Thank you!



EDIT: Why I would need this:



I am starting with a large DataFrame that has multiple duplicated attributes with timestamped 'rows'. At any given timestamp, the information in the rows could be added to, to deleted. I have used df.where() to return a dataframe of the unique values, and am attempting to flatten it down to one attribute collection of 'ids' per row.



In practice, the example table is from a a single GroupBy object.







python pandas dataframe series






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edited Nov 10 at 23:26

























asked Nov 10 at 23:15









Paul Choi

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  • 1




    Can you please explain why you would want this?
    – coldspeed
    Nov 10 at 23:16












  • 1




    Can you please explain why you would want this?
    – coldspeed
    Nov 10 at 23:16







1




1




Can you please explain why you would want this?
– coldspeed
Nov 10 at 23:16




Can you please explain why you would want this?
– coldspeed
Nov 10 at 23:16












1 Answer
1






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up vote
1
down vote



accepted










Instantiate a new series using a dict comprehension (this should be faster than an apply based solution).



pd.Series(c : df[c].dropna().unique().tolist() for c in df.columns)

asset [a]
name [john, dave]
id [1, 2, 3]
dtype: object


If you want a single rowed DataFrame instead, use



pd.Series(
c : df[c].dropna().unique().tolist() for c in df.columns
).to_frame().T

asset name id
0 [a] [john, dave] [1, 2, 3]





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    1 Answer
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    active

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    1 Answer
    1






    active

    oldest

    votes









    active

    oldest

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    active

    oldest

    votes








    up vote
    1
    down vote



    accepted










    Instantiate a new series using a dict comprehension (this should be faster than an apply based solution).



    pd.Series(c : df[c].dropna().unique().tolist() for c in df.columns)

    asset [a]
    name [john, dave]
    id [1, 2, 3]
    dtype: object


    If you want a single rowed DataFrame instead, use



    pd.Series(
    c : df[c].dropna().unique().tolist() for c in df.columns
    ).to_frame().T

    asset name id
    0 [a] [john, dave] [1, 2, 3]





    share|improve this answer
























      up vote
      1
      down vote



      accepted










      Instantiate a new series using a dict comprehension (this should be faster than an apply based solution).



      pd.Series(c : df[c].dropna().unique().tolist() for c in df.columns)

      asset [a]
      name [john, dave]
      id [1, 2, 3]
      dtype: object


      If you want a single rowed DataFrame instead, use



      pd.Series(
      c : df[c].dropna().unique().tolist() for c in df.columns
      ).to_frame().T

      asset name id
      0 [a] [john, dave] [1, 2, 3]





      share|improve this answer






















        up vote
        1
        down vote



        accepted







        up vote
        1
        down vote



        accepted






        Instantiate a new series using a dict comprehension (this should be faster than an apply based solution).



        pd.Series(c : df[c].dropna().unique().tolist() for c in df.columns)

        asset [a]
        name [john, dave]
        id [1, 2, 3]
        dtype: object


        If you want a single rowed DataFrame instead, use



        pd.Series(
        c : df[c].dropna().unique().tolist() for c in df.columns
        ).to_frame().T

        asset name id
        0 [a] [john, dave] [1, 2, 3]





        share|improve this answer












        Instantiate a new series using a dict comprehension (this should be faster than an apply based solution).



        pd.Series(c : df[c].dropna().unique().tolist() for c in df.columns)

        asset [a]
        name [john, dave]
        id [1, 2, 3]
        dtype: object


        If you want a single rowed DataFrame instead, use



        pd.Series(
        c : df[c].dropna().unique().tolist() for c in df.columns
        ).to_frame().T

        asset name id
        0 [a] [john, dave] [1, 2, 3]






        share|improve this answer












        share|improve this answer



        share|improve this answer










        answered Nov 10 at 23:18









        coldspeed

        111k17101169




        111k17101169



























             

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