How to map numeric data into categories / bins in Pandas dataframe









up vote
2
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I've just started coding in python, and my general coding skills are fairly rusty :( so please be a bit patient



I have a pandas dataframe:



SamplePandas



It has around 3m rows. There are 3 kinds of age_units: Y, D, W for years, Days & Weeks. Any individual over 1 year old has an age unit of Y and my first grouping I want is <2y old so all I have to test for in Age Units is Y...



I want to create a new column AgeRange and populate with the following ranges:



  • <2

  • 2 - 18

  • 18 - 35

  • 35 - 65

  • 65+

so I wrote a function



def agerange(values):
for i in values:
if complete.Age_units == 'Y':
if complete.Age > 1 AND < 18 return '2-18'
elif complete.Age > 17 AND < 35 return '18-35'
elif complete.Age > 34 AND < 65 return '35-65'
elif complete.Age > 64 return '65+'
else return '< 2'


I thought if I passed in the dataframe as a whole I would get back what I needed and then could create the column I wanted something like this:



agedetails['age_range'] = ageRange(agedetails)


BUT when I try to run the first code to create the function I get:



 File "<ipython-input-124-cf39c7ce66d9>", line 4
if complete.Age > 1 AND complete.Age < 18 return '2-18'
^
SyntaxError: invalid syntax


Clearly it is not accepting the AND - but I thought I heard in class I could use AND like this? I must be mistaken but then what would be the right way to do this?



So after getting that error, I'm not even sure the method of passing in a dataframe will throw an error either. I am guessing probably yes. In which case - how would I make that work as well?



I am looking to learn the best method, but part of the best method for me is keeping it simple even if that means doing things in a couple of steps...










share|improve this question























  • great answer below by @jpp - also regards to your invalid syntax AND should be small letters and also after if statement condition you need to use : so it should be if complete.Age > 1 and complete.Age < 18: return '2-18'
    – gyx-hh
    Mar 20 at 10:59














up vote
2
down vote

favorite












I've just started coding in python, and my general coding skills are fairly rusty :( so please be a bit patient



I have a pandas dataframe:



SamplePandas



It has around 3m rows. There are 3 kinds of age_units: Y, D, W for years, Days & Weeks. Any individual over 1 year old has an age unit of Y and my first grouping I want is <2y old so all I have to test for in Age Units is Y...



I want to create a new column AgeRange and populate with the following ranges:



  • <2

  • 2 - 18

  • 18 - 35

  • 35 - 65

  • 65+

so I wrote a function



def agerange(values):
for i in values:
if complete.Age_units == 'Y':
if complete.Age > 1 AND < 18 return '2-18'
elif complete.Age > 17 AND < 35 return '18-35'
elif complete.Age > 34 AND < 65 return '35-65'
elif complete.Age > 64 return '65+'
else return '< 2'


I thought if I passed in the dataframe as a whole I would get back what I needed and then could create the column I wanted something like this:



agedetails['age_range'] = ageRange(agedetails)


BUT when I try to run the first code to create the function I get:



 File "<ipython-input-124-cf39c7ce66d9>", line 4
if complete.Age > 1 AND complete.Age < 18 return '2-18'
^
SyntaxError: invalid syntax


Clearly it is not accepting the AND - but I thought I heard in class I could use AND like this? I must be mistaken but then what would be the right way to do this?



So after getting that error, I'm not even sure the method of passing in a dataframe will throw an error either. I am guessing probably yes. In which case - how would I make that work as well?



I am looking to learn the best method, but part of the best method for me is keeping it simple even if that means doing things in a couple of steps...










share|improve this question























  • great answer below by @jpp - also regards to your invalid syntax AND should be small letters and also after if statement condition you need to use : so it should be if complete.Age > 1 and complete.Age < 18: return '2-18'
    – gyx-hh
    Mar 20 at 10:59












up vote
2
down vote

favorite









up vote
2
down vote

favorite











I've just started coding in python, and my general coding skills are fairly rusty :( so please be a bit patient



I have a pandas dataframe:



SamplePandas



It has around 3m rows. There are 3 kinds of age_units: Y, D, W for years, Days & Weeks. Any individual over 1 year old has an age unit of Y and my first grouping I want is <2y old so all I have to test for in Age Units is Y...



I want to create a new column AgeRange and populate with the following ranges:



  • <2

  • 2 - 18

  • 18 - 35

  • 35 - 65

  • 65+

so I wrote a function



def agerange(values):
for i in values:
if complete.Age_units == 'Y':
if complete.Age > 1 AND < 18 return '2-18'
elif complete.Age > 17 AND < 35 return '18-35'
elif complete.Age > 34 AND < 65 return '35-65'
elif complete.Age > 64 return '65+'
else return '< 2'


I thought if I passed in the dataframe as a whole I would get back what I needed and then could create the column I wanted something like this:



agedetails['age_range'] = ageRange(agedetails)


BUT when I try to run the first code to create the function I get:



 File "<ipython-input-124-cf39c7ce66d9>", line 4
if complete.Age > 1 AND complete.Age < 18 return '2-18'
^
SyntaxError: invalid syntax


Clearly it is not accepting the AND - but I thought I heard in class I could use AND like this? I must be mistaken but then what would be the right way to do this?



So after getting that error, I'm not even sure the method of passing in a dataframe will throw an error either. I am guessing probably yes. In which case - how would I make that work as well?



I am looking to learn the best method, but part of the best method for me is keeping it simple even if that means doing things in a couple of steps...










share|improve this question















I've just started coding in python, and my general coding skills are fairly rusty :( so please be a bit patient



I have a pandas dataframe:



SamplePandas



It has around 3m rows. There are 3 kinds of age_units: Y, D, W for years, Days & Weeks. Any individual over 1 year old has an age unit of Y and my first grouping I want is <2y old so all I have to test for in Age Units is Y...



I want to create a new column AgeRange and populate with the following ranges:



  • <2

  • 2 - 18

  • 18 - 35

  • 35 - 65

  • 65+

so I wrote a function



def agerange(values):
for i in values:
if complete.Age_units == 'Y':
if complete.Age > 1 AND < 18 return '2-18'
elif complete.Age > 17 AND < 35 return '18-35'
elif complete.Age > 34 AND < 65 return '35-65'
elif complete.Age > 64 return '65+'
else return '< 2'


I thought if I passed in the dataframe as a whole I would get back what I needed and then could create the column I wanted something like this:



agedetails['age_range'] = ageRange(agedetails)


BUT when I try to run the first code to create the function I get:



 File "<ipython-input-124-cf39c7ce66d9>", line 4
if complete.Age > 1 AND complete.Age < 18 return '2-18'
^
SyntaxError: invalid syntax


Clearly it is not accepting the AND - but I thought I heard in class I could use AND like this? I must be mistaken but then what would be the right way to do this?



So after getting that error, I'm not even sure the method of passing in a dataframe will throw an error either. I am guessing probably yes. In which case - how would I make that work as well?



I am looking to learn the best method, but part of the best method for me is keeping it simple even if that means doing things in a couple of steps...







python python-2.7 pandas numpy dataframe






share|improve this question















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edited Apr 19 at 0:14









jpp

87.1k194999




87.1k194999










asked Mar 20 at 10:48









kiltannen

241213




241213











  • great answer below by @jpp - also regards to your invalid syntax AND should be small letters and also after if statement condition you need to use : so it should be if complete.Age > 1 and complete.Age < 18: return '2-18'
    – gyx-hh
    Mar 20 at 10:59
















  • great answer below by @jpp - also regards to your invalid syntax AND should be small letters and also after if statement condition you need to use : so it should be if complete.Age > 1 and complete.Age < 18: return '2-18'
    – gyx-hh
    Mar 20 at 10:59















great answer below by @jpp - also regards to your invalid syntax AND should be small letters and also after if statement condition you need to use : so it should be if complete.Age > 1 and complete.Age < 18: return '2-18'
– gyx-hh
Mar 20 at 10:59




great answer below by @jpp - also regards to your invalid syntax AND should be small letters and also after if statement condition you need to use : so it should be if complete.Age > 1 and complete.Age < 18: return '2-18'
– gyx-hh
Mar 20 at 10:59












1 Answer
1






active

oldest

votes

















up vote
8
down vote



accepted










With Pandas, you should avoid row-wise operations, as these usually involve an inefficient Python-level loop. Here are a couple of alternatives.



Pandas: pd.cut



As @JonClements suggests, you can use pd.cut for this, the benefit here being that your new column becomes a Categorical.



You only need to define your boundaries (including np.inf) and category names, then apply pd.cut to the desired numeric column.



bins = [0, 2, 18, 35, 65, np.inf]
names = ['<2', '2-18', '18-35', '35-65', '65+']

df['AgeRange'] = pd.cut(df['Age'], bins, labels=names)

print(df.dtypes)

# Age int64
# Age_units object
# AgeRange category
# dtype: object


NumPy: np.digitize



np.digitize provides another clean solution. The idea is to define your boundaries and names, create a dictionary, then apply np.digitize to your Age column. Finally, use your dictionary to map your category names.



Note that for boundary cases the lower bound is used for mapping to a bin.



import pandas as pd, numpy as np

df = pd.DataFrame('Age': [99, 53, 71, 84, 84],
'Age_units': ['Y', 'Y', 'Y', 'Y', 'Y'])

bins = [0, 2, 18, 35, 65]
names = ['<2', '2-18', '18-35', '35-65', '65+']

d = dict(enumerate(names, 1))

df['AgeRange'] = np.vectorize(d.get)(np.digitize(df['Age'], bins))


Result



 Age Age_units AgeRange
0 99 Y 65+
1 53 Y 35-65
2 71 Y 65+
3 84 Y 65+
4 84 Y 65+





share|improve this answer


















  • 2




    Or... add float('inf') (or np.inf) to the end of bins, and then use: pd.cut(df.Age, bins, labels=names)... That way you'll get a categorical series instead of a string...
    – Jon Clements
    Mar 20 at 11:02







  • 1




    @jpp This is BRILLIANT! Thank you for taking the trouble to provide such a clear and well thought through response, and adding in the bins/ pandas cut method with detail is the perfect icing on the cake. This is the simplest most elegant approach, and I am certainly using it thank you. I had seen somewhere in all the looking I was doing something about Bins - but hadn't figured out how to apply it, and certainly not how easy it would be! Thanks again!
    – kiltannen
    Mar 20 at 20:37










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1 Answer
1






active

oldest

votes








1 Answer
1






active

oldest

votes









active

oldest

votes






active

oldest

votes








up vote
8
down vote



accepted










With Pandas, you should avoid row-wise operations, as these usually involve an inefficient Python-level loop. Here are a couple of alternatives.



Pandas: pd.cut



As @JonClements suggests, you can use pd.cut for this, the benefit here being that your new column becomes a Categorical.



You only need to define your boundaries (including np.inf) and category names, then apply pd.cut to the desired numeric column.



bins = [0, 2, 18, 35, 65, np.inf]
names = ['<2', '2-18', '18-35', '35-65', '65+']

df['AgeRange'] = pd.cut(df['Age'], bins, labels=names)

print(df.dtypes)

# Age int64
# Age_units object
# AgeRange category
# dtype: object


NumPy: np.digitize



np.digitize provides another clean solution. The idea is to define your boundaries and names, create a dictionary, then apply np.digitize to your Age column. Finally, use your dictionary to map your category names.



Note that for boundary cases the lower bound is used for mapping to a bin.



import pandas as pd, numpy as np

df = pd.DataFrame('Age': [99, 53, 71, 84, 84],
'Age_units': ['Y', 'Y', 'Y', 'Y', 'Y'])

bins = [0, 2, 18, 35, 65]
names = ['<2', '2-18', '18-35', '35-65', '65+']

d = dict(enumerate(names, 1))

df['AgeRange'] = np.vectorize(d.get)(np.digitize(df['Age'], bins))


Result



 Age Age_units AgeRange
0 99 Y 65+
1 53 Y 35-65
2 71 Y 65+
3 84 Y 65+
4 84 Y 65+





share|improve this answer


















  • 2




    Or... add float('inf') (or np.inf) to the end of bins, and then use: pd.cut(df.Age, bins, labels=names)... That way you'll get a categorical series instead of a string...
    – Jon Clements
    Mar 20 at 11:02







  • 1




    @jpp This is BRILLIANT! Thank you for taking the trouble to provide such a clear and well thought through response, and adding in the bins/ pandas cut method with detail is the perfect icing on the cake. This is the simplest most elegant approach, and I am certainly using it thank you. I had seen somewhere in all the looking I was doing something about Bins - but hadn't figured out how to apply it, and certainly not how easy it would be! Thanks again!
    – kiltannen
    Mar 20 at 20:37














up vote
8
down vote



accepted










With Pandas, you should avoid row-wise operations, as these usually involve an inefficient Python-level loop. Here are a couple of alternatives.



Pandas: pd.cut



As @JonClements suggests, you can use pd.cut for this, the benefit here being that your new column becomes a Categorical.



You only need to define your boundaries (including np.inf) and category names, then apply pd.cut to the desired numeric column.



bins = [0, 2, 18, 35, 65, np.inf]
names = ['<2', '2-18', '18-35', '35-65', '65+']

df['AgeRange'] = pd.cut(df['Age'], bins, labels=names)

print(df.dtypes)

# Age int64
# Age_units object
# AgeRange category
# dtype: object


NumPy: np.digitize



np.digitize provides another clean solution. The idea is to define your boundaries and names, create a dictionary, then apply np.digitize to your Age column. Finally, use your dictionary to map your category names.



Note that for boundary cases the lower bound is used for mapping to a bin.



import pandas as pd, numpy as np

df = pd.DataFrame('Age': [99, 53, 71, 84, 84],
'Age_units': ['Y', 'Y', 'Y', 'Y', 'Y'])

bins = [0, 2, 18, 35, 65]
names = ['<2', '2-18', '18-35', '35-65', '65+']

d = dict(enumerate(names, 1))

df['AgeRange'] = np.vectorize(d.get)(np.digitize(df['Age'], bins))


Result



 Age Age_units AgeRange
0 99 Y 65+
1 53 Y 35-65
2 71 Y 65+
3 84 Y 65+
4 84 Y 65+





share|improve this answer


















  • 2




    Or... add float('inf') (or np.inf) to the end of bins, and then use: pd.cut(df.Age, bins, labels=names)... That way you'll get a categorical series instead of a string...
    – Jon Clements
    Mar 20 at 11:02







  • 1




    @jpp This is BRILLIANT! Thank you for taking the trouble to provide such a clear and well thought through response, and adding in the bins/ pandas cut method with detail is the perfect icing on the cake. This is the simplest most elegant approach, and I am certainly using it thank you. I had seen somewhere in all the looking I was doing something about Bins - but hadn't figured out how to apply it, and certainly not how easy it would be! Thanks again!
    – kiltannen
    Mar 20 at 20:37












up vote
8
down vote



accepted







up vote
8
down vote



accepted






With Pandas, you should avoid row-wise operations, as these usually involve an inefficient Python-level loop. Here are a couple of alternatives.



Pandas: pd.cut



As @JonClements suggests, you can use pd.cut for this, the benefit here being that your new column becomes a Categorical.



You only need to define your boundaries (including np.inf) and category names, then apply pd.cut to the desired numeric column.



bins = [0, 2, 18, 35, 65, np.inf]
names = ['<2', '2-18', '18-35', '35-65', '65+']

df['AgeRange'] = pd.cut(df['Age'], bins, labels=names)

print(df.dtypes)

# Age int64
# Age_units object
# AgeRange category
# dtype: object


NumPy: np.digitize



np.digitize provides another clean solution. The idea is to define your boundaries and names, create a dictionary, then apply np.digitize to your Age column. Finally, use your dictionary to map your category names.



Note that for boundary cases the lower bound is used for mapping to a bin.



import pandas as pd, numpy as np

df = pd.DataFrame('Age': [99, 53, 71, 84, 84],
'Age_units': ['Y', 'Y', 'Y', 'Y', 'Y'])

bins = [0, 2, 18, 35, 65]
names = ['<2', '2-18', '18-35', '35-65', '65+']

d = dict(enumerate(names, 1))

df['AgeRange'] = np.vectorize(d.get)(np.digitize(df['Age'], bins))


Result



 Age Age_units AgeRange
0 99 Y 65+
1 53 Y 35-65
2 71 Y 65+
3 84 Y 65+
4 84 Y 65+





share|improve this answer














With Pandas, you should avoid row-wise operations, as these usually involve an inefficient Python-level loop. Here are a couple of alternatives.



Pandas: pd.cut



As @JonClements suggests, you can use pd.cut for this, the benefit here being that your new column becomes a Categorical.



You only need to define your boundaries (including np.inf) and category names, then apply pd.cut to the desired numeric column.



bins = [0, 2, 18, 35, 65, np.inf]
names = ['<2', '2-18', '18-35', '35-65', '65+']

df['AgeRange'] = pd.cut(df['Age'], bins, labels=names)

print(df.dtypes)

# Age int64
# Age_units object
# AgeRange category
# dtype: object


NumPy: np.digitize



np.digitize provides another clean solution. The idea is to define your boundaries and names, create a dictionary, then apply np.digitize to your Age column. Finally, use your dictionary to map your category names.



Note that for boundary cases the lower bound is used for mapping to a bin.



import pandas as pd, numpy as np

df = pd.DataFrame('Age': [99, 53, 71, 84, 84],
'Age_units': ['Y', 'Y', 'Y', 'Y', 'Y'])

bins = [0, 2, 18, 35, 65]
names = ['<2', '2-18', '18-35', '35-65', '65+']

d = dict(enumerate(names, 1))

df['AgeRange'] = np.vectorize(d.get)(np.digitize(df['Age'], bins))


Result



 Age Age_units AgeRange
0 99 Y 65+
1 53 Y 35-65
2 71 Y 65+
3 84 Y 65+
4 84 Y 65+






share|improve this answer














share|improve this answer



share|improve this answer








edited Nov 27 at 19:48









user3483203

29.7k72353




29.7k72353










answered Mar 20 at 10:55









jpp

87.1k194999




87.1k194999







  • 2




    Or... add float('inf') (or np.inf) to the end of bins, and then use: pd.cut(df.Age, bins, labels=names)... That way you'll get a categorical series instead of a string...
    – Jon Clements
    Mar 20 at 11:02







  • 1




    @jpp This is BRILLIANT! Thank you for taking the trouble to provide such a clear and well thought through response, and adding in the bins/ pandas cut method with detail is the perfect icing on the cake. This is the simplest most elegant approach, and I am certainly using it thank you. I had seen somewhere in all the looking I was doing something about Bins - but hadn't figured out how to apply it, and certainly not how easy it would be! Thanks again!
    – kiltannen
    Mar 20 at 20:37












  • 2




    Or... add float('inf') (or np.inf) to the end of bins, and then use: pd.cut(df.Age, bins, labels=names)... That way you'll get a categorical series instead of a string...
    – Jon Clements
    Mar 20 at 11:02







  • 1




    @jpp This is BRILLIANT! Thank you for taking the trouble to provide such a clear and well thought through response, and adding in the bins/ pandas cut method with detail is the perfect icing on the cake. This is the simplest most elegant approach, and I am certainly using it thank you. I had seen somewhere in all the looking I was doing something about Bins - but hadn't figured out how to apply it, and certainly not how easy it would be! Thanks again!
    – kiltannen
    Mar 20 at 20:37







2




2




Or... add float('inf') (or np.inf) to the end of bins, and then use: pd.cut(df.Age, bins, labels=names)... That way you'll get a categorical series instead of a string...
– Jon Clements
Mar 20 at 11:02





Or... add float('inf') (or np.inf) to the end of bins, and then use: pd.cut(df.Age, bins, labels=names)... That way you'll get a categorical series instead of a string...
– Jon Clements
Mar 20 at 11:02





1




1




@jpp This is BRILLIANT! Thank you for taking the trouble to provide such a clear and well thought through response, and adding in the bins/ pandas cut method with detail is the perfect icing on the cake. This is the simplest most elegant approach, and I am certainly using it thank you. I had seen somewhere in all the looking I was doing something about Bins - but hadn't figured out how to apply it, and certainly not how easy it would be! Thanks again!
– kiltannen
Mar 20 at 20:37




@jpp This is BRILLIANT! Thank you for taking the trouble to provide such a clear and well thought through response, and adding in the bins/ pandas cut method with detail is the perfect icing on the cake. This is the simplest most elegant approach, and I am certainly using it thank you. I had seen somewhere in all the looking I was doing something about Bins - but hadn't figured out how to apply it, and certainly not how easy it would be! Thanks again!
– kiltannen
Mar 20 at 20:37

















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